PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090639.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CAMTA
Protein Properties Length: 1111aa    MW: 124521 Da    PI: 6.212
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090639.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.38.3e-55141292116
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     +ke ++rwlk+ e+  iL n+ek++lt+e+++rp+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+een+ fq
  XP_010090639.1  14 YKEaQSRWLKPAEVFFILRNHEKYKLTQEPPKRPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEENHCFQ 108
                     56779****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhyle 116
                     rr+yw+L+ + e+ivlvhy++
  XP_010090639.1 109 RRSYWMLDPASEHIVLVHYRD 129
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.72610136IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7413131IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4716129IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-10548634IPR013783Immunoglobulin-like fold
CDDcd001027.29E-6549633No hitNo description
PfamPF018338.7E-10550632IPR002909IPT domain
SuperFamilySSF812965.29E-19550633IPR014756Immunoglobulin E-set
CDDcd002047.67E-13733837No hitNo description
Gene3DG3DSA:1.25.40.206.2E-14744839IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.265745837IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-15747840IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.751778810IPR002110Ankyrin repeat
PfamPF136371.7E-5780836No hitNo description
SMARTSM0001519895917IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.65896925IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.96E-78981002IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5950972IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.565951980IPR000048IQ motif, EF-hand binding site
PfamPF006120.024953971IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0082973995IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261975998IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013976995IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MNKMQSEYDI NELYKEAQSR WLKPAEVFFI LRNHEKYKLT QEPPKRPTSG SLFLFNKRVL  60
RFFRKDGHNW RKKKDGRTVG EAHERLKVGN VETLNCYYAH GEENHCFQRR SYWMLDPASE  120
HIVLVHYRDI TEGNSSSGSG AQLSPGSFSS INQSPSPSNP QNAGSLSISD YQNLTSPGSI  180
EVSSDPLIQI NGKDHNGSID GTRESGSSAK HEVSQALRKL EEQLNLNDDT FKECGPPCSQ  240
VEDPNLSNLL DYKQRRNEKL APRFYGPFEV SAKVGAVAYH LRLPEAAAVH PVFHVSQLHR  300
AVEEAAVSPT LPPQLSDTME LVTEPAVLLG VREGQCGDHA ESEANLPPHD DTWESYTAIN  360
AQFPEFHLED KVRLWARGID RPPLCFIYAR KRRNARSGGK VRRNVAVDDD GSKSGCIDED  420
HHQFFGQEYT YERKESLSWK DVLNSCTTSG VECQQNHLSS SRNEPGSTGN APREDLEHHQ  480
WQNSNGSSVD NASLLMCQGF DGFKFSTYPS TSQIYGTNSD YYAMLFDQGQ IAPLELDMNL  540
TVAQKQKFRI QEISPEWGYA TETTKIIIVG SFLCNSPESA WNCMFGDIEV PVQIIQEGVI  600
CCEAPPHPPG KVTLCITSGN RESCSEVREF EYRVKTRNSI EGDLSSLEST RSREELLLLV  660
RFIRMLLSDL SMQKRGVIDP DAPNKFKADD EPWDSVIESL LLGSGTSSST INWLLEELLK  720
EKLQQWLSSK SQDQRNQTGC SLSKKEQGII HMVAGLGFEW ALNPILSSGV SINFRDITGW  780
TALHWAAHFG REKMVAALIA SGAFAGAVTD PNSRDPTGIT AASVAATHGH KGLAGYLSEM  840
ALTSHLSSLT LEESELSRGS AEVEAENTVN IVSKQNLITN EDQLSLKHTL AAVRNAAQAA  900
ARIQSAFRAH SFRKRQLLEA ADSVDEYGMS SEDIQELSAM AKLNFRNPRD YNSAALSIQK  960
KYRGWKGRKD FLAFRQKVVQ IQACVRGYQV RKHYKVICWA VGVLEKVVLR WRRRGSGLRG  1020
FRPETEPIDE SEDEDILKVF RKEKVDGAIN QAISRVLSMV KSSEARQQYH RVLEKYGEVK  1080
AELGETSDEA ELSTDLDDIF GVEDINLYQF P
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090639.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017619.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLW9QW690.0W9QW69_9ROSA; Calmodulin-binding transcription activator 4
STRINGXP_010090639.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-175Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]