PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090133.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRF
Protein Properties Length: 391aa    MW: 44560.2 Da    PI: 8.2455
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090133.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.2e-2574117144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  XP_010090133.1  74 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 117
                     79***************************************987 PP
2QLQ58.81.6e-20843237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FTa+Q+q+L++Q+l++Ky+a++ P+Pp+Ll+ i++
  XP_010090133.1  8 PFTASQWQELEHQALIFKYMASGIPIPPDLLFTIKN 43
                    8******************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.862843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.15674118IPR014977WRC domain
PfamPF088797.0E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSGRNRFPFT ASQWQELEHQ ALIFKYMASG IPIPPDLLFT IKNSYLDSSL SSKLLIPQHV  60
GWNCFQMGLG KKIDPEPGRC RRTDGKKWRC SKEAFPDSKY CERHMHRGKN RSRKPVEVFK  120
SPTTSASQTP ISSSSSITHK NNLSNMITTT STQTQTPNSN NSLSSVSYDS QNRHNLQYPC  180
YNNSLVYHHH PHHTSSSRPH HGMIGLPSQD SNTSLLFDSD LRRNRYHHVY GMREVDRDDH  240
DHEHEHAFFS EEPSSGTITR GFSSMDDSWQ LTPVLSMSCS SSSSSKQRST CSGLQNEHSY  300
LQLQSASTQA YYKQQEHCDL KKVERKEEIA QKTIHFFDEW PVKEKDSWLD LDDKSSNSGS  360
VSTTQLSISI PNTNSSSYDF PIFGSRIHNG N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090133.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359131e-39AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017215.10.0growth-regulating factor 6
TrEMBLW9QJY30.0W9QJY3_9ROSA; Uncharacterized protein
STRINGXP_010090133.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-49growth-regulating factor 5