PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090049.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 609aa    MW: 67727.4 Da    PI: 7.6497
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090049.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06321338926
                     GGGTS--TTTTT-SS-SS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                     f  +G C++G++C+F H+
  XP_010090049.1 321 FVSSGSCPRGEKCHFQHD 338
                     5557*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.38E-337236No hitNo description
PROSITE profilePS5010313.272312340IPR000571Zinc finger, CCCH-type
SMARTSM003560.002314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6315341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-7316340IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025346371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413349372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4349373IPR000571Zinc finger, CCCH-type
PfamPF046773.3E-41388503IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541974.16E-9390467IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.102.9E-6393470IPR011146HIT-like domain
PfamPF046765.7E-19528606IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLF KRVASVNKSA GPFDALLCVG QFFPDSPDRL AEFADYLEGR  60
SEIPLPTYFI GDYGIAAAKF LLAASKDPAN QGFKMDGLKI RENLFWLKGS GKFTLHGLCV  120
AYLSGRNSAD GQQFGTYSQD DVDALRAIAE EPGLVDLFLT YPSIFGVTNR ASTSGLPPGV  180
SESSSSDSTV AELVAEIKPR YGTAWKLSTK GVFYDREPYS NVDAVYVTRF LGLAPVGNKD  240
KQKFIHAISP TPASMMSASD ISAKPAGTTL SPYTVQEMVD GREAAKRSND GVSDSQYWRY  300
DVSQKRQKHG AIDGNKLCFK FVSSGSCPRG EKCHFQHDVD AREQSMRGVC FDFLNKGKCE  360
RGPDCNFKHS LQDEGEGYSH RRRGSENAST DRSKECWFCL SSPNVESHLI ISIGENFYCA  420
LPKGPLVQDH VLVIPVEHLP NTLSLPQKSE IELGRFQNSL RKYYKSQGKD VVFFEWVSKR  480
STHANLQAIP VPSSKAAALQ NIFNLAADKL GFKFAIKKFN NNSDGRNYLK TQFDKNFSFF  540
YIELPDGTIL SHVVEENEKF PAQFGREVLA GLLKIADRAD WRNCTYSKEE ETKMVTDFKS  600
QFQEFDSNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U1e-14394606673887CWF19-like protein 2
6id1_U1e-14394606673887CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017167.10.0zinc finger CCCH domain-containing protein 64
RefseqXP_024017168.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLW9QJX90.0W9QJX9_9ROSA; Zinc finger CCCH domain-containing protein 64
STRINGXP_010090049.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923