PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 36772.6 Da PI: 7.6566 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.7 | 9.8e-49 | 6 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp+GfrFhP+deelv++yL +k+ + +++ + + +vd++k+ePw++p ++ + k+wyf+s+rd+kyatg r+nrat+sgyWkatg XP_010087146.1 6 LPAGFRFHPRDEELVCDYLFNKILNLSCDHSAnghqyyssLFIHVDLNKSEPWEIPGSACVGGKDWYFYSQRDRKYATGLRTNRATASGYWKATG 100 799**********************99555334566666568899***********7666789******************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 kd++vl+k +g+lvg++ktLvfy+grapkg+ktdWvmhe+rle XP_010087146.1 101 KDRPVLRKggGGALVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 144 *******9888889***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-58 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.264 | 6 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 7 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MVESKLPAGF RFHPRDEELV CDYLFNKILN LSCDHSANGH QYYSSLFIHV DLNKSEPWEI 60 PGSACVGGKD WYFYSQRDRK YATGLRTNRA TASGYWKATG KDRPVLRKGG GGALVGMRKT 120 LVFYQGRAPK GRKTDWVMHE FRLEGSLVTK LSSFKEDWVL CRVFYKSREE GGASASKLAS 180 SDVMGLGMKS NSLPALMDAY ISFDQPTPPP MPPMPHETPD HHHQQVPCLS HNINLPQNYH 240 DLILSNLPAK TGTSTRAEAA TLGVPNLVDL DPFSFSRADN ELLLKAILNQ LTTPDFKGSG 300 SPVTLSIGEG TSESYNLSET EVGMPNVWAH Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 1 | 167 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 1 | 167 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 1 | 167 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 1 | 167 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 1 | 167 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 1 | 167 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 1 | 167 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087146.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087146.2 | 0.0 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 7e-95 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | W9QCM5 | 0.0 | W9QCM5_9ROSA; NAC domain-containing protein | ||||
STRING | XP_010087146.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 5e-95 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21390795 |