PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010086954.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 237aa MW: 25617.1 Da PI: 8.5044

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010086954.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.1	8.7e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_010086954.1 2 SCNGCRVLRKGCSESCILRPCLqwidtADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6*******************9998666789************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_010086954.1 97 AVETVLR 103 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.939	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLGGGSPT 120 AASDEASEAE VTCTDIWKLR DPSSGSRFST SRSRSSPKRK RSDEPEKLRQ NADLDLRLTP 180 IAFPAKPTAP NKAELRRPGS PSMISEESVT TTCFESGLAD NPRNANGGEK KLLNLFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010086954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086954.1	1e-174	LOB domain-containing protein 39
Swissprot	Q9SZE8	9e-95	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	W9QC49	1e-172	W9QC49_9ROSA; Uncharacterized protein
STRING	XP_010086954.1	1e-173	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	6e-91	LOB domain-containing protein 39

Link Out ? help Back to Top
Entrez Gene	21389364