PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803615.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 462aa    MW: 50724 Da    PI: 6.888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.7e-063503881154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_009803615.1 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.23E-7331392No hitNo description
PROSITE profilePS5088812.424339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-12349402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036350394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAEEFQLGRG NWWESSSSTT TTTSSSRNNK FESGILSSTT TTMSSVSTAL NSMASNFGCW  60
PTEIEDIKAR SSLNPVSVSA SDSSSMVFPA DPQKLHASES GALNLQVMGL GLPSQGLDWN  120
QPFFRGEKAG SGFRSILEEG LSSDANYQQE GSCQQDHHWT QKIYTGNDYN NKQMDRGISL  180
DHQPVFNAPN MSSNLDKAPY GSPSNMLQGL LISDSHQESN FTSATSLYYP PYNPSNCDVN  240
HAAADVMPAS SSSSSWSKFP KQQWPMPLPH GQSHFSGTPF WNATSASMDD VRSGFHLPSI  300
HQQLPNPVDT KPKHTAEDKN IRTIAKRSGS ETSNKRPRNE APSQMPAFKV RKEKMGDRIT  360
ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVNVLSTPYM KSGASRQQHQ QSTGDRSNVN  420
PEGAKQDLRS RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-49HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-49HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803615.10.0PREDICTED: transcription factor bHLH112-like
RefseqXP_016514446.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1S4DM080.0A0A1S4DM08_TOBAC; transcription factor bHLH112-like
TrEMBLA0A1U7YY070.0A0A1U7YY07_NICSY; transcription factor bHLH112-like
STRINGXP_009803615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-59bHLH family protein