PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803283.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 37973.2 Da    PI: 5.002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.46.9e-15131182155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++Y+k+L+
  XP_009803283.1 131 QRMTHIAVERNRRKQMNEYLSVLRTLMPDS---YVQRGDQASIVSGAINYVKELE 182
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.94E-15129186No hitNo description
Gene3DG3DSA:4.10.280.103.8E-15129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.923130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17130199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-12131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALEAVTQQQ QYLYALLGTA NWDGGSGSGP GFDYHNNEPF EFLDNNDQNV GAAQEYEDYS  60
SWNLPPPLLV DYSQNDFNQW GQNSSTYVLD HNFAIADQLP QLESPVEMSS TTRQRRRRTR  120
SKKNQEEIES QRMTHIAVER NRRKQMNEYL SVLRTLMPDS YVQRGDQASI VSGAINYVKE  180
LEQQLQFLCG QKHLNEKKLQ DINGETSPFS EFFSIPQYST TMTAATSENR ASGNEYYTRN  240
QQLPATADIE VTMVENHANL KIRSQRRPRL LPRIISGLES LRLSVLHLNV SKVDQFVLCS  300
LSLKVEEDCK LSSVEDIAAV VNQILGRIHE EAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119RQRRRRTR
2131142RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331331e-106AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755131e-106HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803283.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T43e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U7YJI70.0A0A1U7YJI7_NICSY; transcription factor bHLH94-like
STRINGXP_009803283.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]