PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803026.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 297aa    MW: 31501.6 Da    PI: 9.7673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.1e-10104129227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_009803026.1 104 KTRLCNKFNTAEGCKFGDKCNFAHGE 129
                     8***********************96 PP
2zf-CCCH34.82.9e-11264288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C +fa+ G C +G+rC+FaHg
  XP_009803026.1 264 FKTKICENFAK-GSCTFGERCHFAHG 288
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-14100134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8101133IPR000571Zinc finger, CCCH-type
SMARTSM003560.001102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882102130IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.82E-14165245IPR004088K Homology domain, type 1
SMARTSM003222.4E-10172242IPR004087K Homology domain
PROSITE profilePS5008413.858173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.4E-14173243IPR004088K Homology domain, type 1
CDDcd001051.29E-12175237No hitNo description
PfamPF000132.6E-8175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.0E-16261293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-8262293IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7263289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699263290IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFGGDRKRG RPHGPINGNG TFKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQLLGSNPA LPAASRNSIA PLSFPDGSSP PAVKTRLCNK FNTAEGCKFG  120
DKCNFAHGEW ELGKPMAPLH EESRGMFQTH GRYGSRPETT PAGFGAAASF GSSATAKISV  180
DASLAGPIIG KGGVNSKQIS RVTGVKFSIR DHESDPNLRN IELEGTIDQI GQASQMVREL  240
IQSVTAKSAA PLMKNPSSTA TSNFKTKICE NFAKGSCTFG ERCHFAHGAE ELRRSGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803026.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016471702.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4A4V50.0A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7YM220.0A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009803026.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-51C3H family protein