PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009799428.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 215aa MW: 24246.6 Da PI: 7.6595

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	201.4	3.6e-62	6	167	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCts+lsvnl+k+s + hl sl+++ +++l+v++e+++ n+++ +s+ + XP_009799428.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSILSVNLMKTSLV---PLHLFASLNQSEQQKLEVDKEDIDANKKSVDSEISF 97 789999*********************97369************998854...346667888889999999****9999999999 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 v+s+ +e++ e+v v++ v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ XP_009799428.1 98 VASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 167 99988.555555555577769**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.0E-58	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	115	169	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.4E-5	118	169	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSI LSVNLMKTSL 60 VPLHLFASLN QSEQQKLEVD KEDIDANKKS VDSEISFVAS SDEEDQIENV VPVYQVVNKP 120 PEKRQRAPSA YNCFIKEEIK RLKTIYPNMT HKQAFSTAAK NWAHFPPSQH RGDRESCSLG 180 DRKMPKISAA RNSQVPRDCN GFFERKDSNM TPSNE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799428.1	1e-161	PREDICTED: axial regulator YABBY 4 isoform X1
Refseq	XP_016476192.1	1e-161	PREDICTED: axial regulator YABBY 4-like isoform X1
Swissprot	Q9LDT3	1e-64	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4AHM5	1e-160	A0A1S4AHM5_TOBAC; axial regulator YABBY 4-like isoform X1
TrEMBL	A0A1U7Y8J2	1e-160	A0A1U7Y8J2_NICSY; axial regulator YABBY 4 isoform X1
STRING	XP_009799428.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-67	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]