PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009797678.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20516.2 Da PI: 9.3005 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.8 | 4.5e-16 | 16 | 62 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e+k r+vtfskR++ ++ KA E S+ ++a+v v++fs++gk XP_009797678.1 16 YVESKEARYVTFSKRKASLFRKADEFSTVTGADVGVLLFSPSGKPCS 62 5799***************************************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.703 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-23 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-12 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-19 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-12 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-12 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MARRTSRGRQ KIEMKYVESK EARYVTFSKR KASLFRKADE FSTVTGADVG VLLFSPSGKP 60 CSYTSTSVEK ITEKFREWKQ QNADEGKSSV FQAFDDLCKD IQDENEKAKS RELRYKVMYP 120 GAEIPADKER LEKFMEMKLR LENINEATKN HIRAERLKFD LNVVPEYEVG ESSGTHH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797678.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U7Y3G7 | 1e-128 | A0A1U7Y3G7_NICSY; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009797678.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-20 | AGAMOUS-like 29 |