PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796654.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 315aa    MW: 35887.6 Da    PI: 4.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10149192654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +i+  +++Y k+L
  XP_009796654.1 149 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSIVGDTIDYTKEL 192
                     589*********************66......9*************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14146213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7149192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13150204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEYYSGNGFL LLALRSDSRE TSLPIEMNDL YYNNGWNYEC FGENAVPIPL PCTTTTTTSS  60
FEDYSFDQNL NNSLISEFYS TQLELTNSSN NWFGTPFTSQ LQDLEVENFA CKLERTESAV  120
TAPTFNIGSL CPEKKVNTKK LNGQPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS  180
IVGDTIDYTK ELLEKINNLQ EEMELGPNQL SLMSIFKNEK PIEIFVRNSP KFDVERRNID  240
TRVEITCAGK SDLLLSTLTT LDALGLEAQH CVISCFNDFA MQASCFEEME QRGFTNAEDI  300
KQTLFRNAGY VGKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-53HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755242e-53HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796654.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL12e-70BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1U7YBM50.0A0A1U7YBM5_NICSY; transcription factor bHLH93-like
STRINGXP_009796654.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-63beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]