PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796421.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 351aa    MW: 37467.8 Da    PI: 7.8454
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.33.5e-671383024154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 
                      +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq    ++++ + a+     +++++k++r  +s++++++s+t++s++
  XP_009796421.1 138 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVNSQATTTASHTSTSNT 232
                     5689*********************************************98766655544332233447788899999999************** PP

          DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++++tss          lP +v+++avf+cvrv+svddg++e+aYq++v igGhvfkG+LydqG+ee
  XP_009796421.1 233 TPPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGDDEFAYQAVVRIGGHVFKGFLYDQGIEE 302
                     ********999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-62139301IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.9E-27141183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-28253300IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT  60
SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDNEGGGF QFFSNQQPQN STNYTKNSNI  120
LGSGSGNNNI GGSVSSTSSA TCQDCGNQAK KDCPHRRCRT CCKSRGFDCT THVKSTWVPA  180
ARRRERQLIG GTSTNVNVAA GSSSQSTSSA KKPRLVNSQA TTTASHTSTS NTTPPRSFDT  240
SSSHQDASFK ASLPGQVRAP AVFKCVRVTS VDDGDDEFAY QAVVRIGGHV FKGFLYDQGI  300
EEGKDNNNYP NLSDLHLGGS GNIINETSDI YAASTGGGGL LGGSNYGNQI N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796421.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_016458851.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK92e-80LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1S3Z3390.0A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A1U7Y3890.0A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1
STRINGXP_009796421.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.42e-73Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]