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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009794499.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
SRS |
| Protein Properties |
Length: 349aa MW: 37796.5 Da PI: 8.1616 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009794499.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 226 | 7.1e-70 | 125 | 278 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91
+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ +++++ +++ +++++s+l++t+l
XP_009794499.1 125 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHNQQQQtqqlslRADSNIIPKRPRENTSSSLACTRL 219
7899*****************************************************99998888555555333333333345678888888888 PP
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+ +s+ ++P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
XP_009794499.1 220 PAISSE---VGGHFPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 278
887655...5677***********************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MSGFFTLGGG GGGGNKEQEQ EQDQLATNSF LLFKNEEIYN KGFELWQQYY QLHQQRAQTP 60
QHQVQEMDFS VGVGPSNNRR IISGSSSSSG NNNIVGDDNN NNNNHNYSNS FRVMRATGGS 120
SSSGVGGMNC QDCGNQAKKD CPHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAA 180
LQQHNQQQQT QQLSLRADSN IIPKRPRENT SSSLACTRLP AISSEVGGHF PAEVSSQAVF 240
RCVKVSAIDD AEDQFAYQTA VNIGGHLFKG ILYDQGPEGR YSGGGGESSA GSGAAQQALN 300
FITGATTSTT AAAATSHQQQ HGTMFDPSVY PTPINAFMAG TQFFPPPRP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 1e-60 | Lateral root primordium (LRP) protein-related |
