PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009793957.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 379aa MW: 44219.4 Da PI: 7.5491

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009793957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	4.9e-08	26	62	55	91
FAR1 55 raetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +++ +Cka+l ++++g w+v+k++++HnH+l p XP_009793957.1 26 FTTKTNNCKARLATVLDDSGCWRVSKVVHDHNHDLLP 62 3456668***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-6	25	62	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-21	154	224	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MENEFTDEDV VVGPISGMTR IRRIKFTTKT NNCKARLATV LDDSGCWRVS KVVHDHNHDL 60 LPSVSHLMAG HGSVCDSLKR DLVAHDRSSI RPSKNIRLDE VQRGGPQNLG CTPKDCRNYI 120 LKSRNFEMQE GDAQSLLNFF REIQAAYEQF HDAICFDTTY LVNQYNMPCA SFVGINHHRQ 180 SILLGCALMS HEDIDSYKLV FRTWLDAMGN VHPDAIITDQ CQSISGVRPS KIARAEFKSM 240 VLDSITVEVF ERKWAEYISR YNLHIRNWFN KLYSEKEKWV PVYLDMYFWG GMLFTQRSEG 300 MHAFFDGYIT RQSTFRMFVH QYELAIRAKH EKELEAEYRS KGFQIVCESM FKWEQQTIQC 360 YTRTIYEIFQ DTAKKIVSL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MENEFTDEDV VVGPISGMTR IRRIKFTTKT NNCKARLATV LDDSGCWRVS KVVHDHNHDL  60
LPSVSHLMAG HGSVCDSLKR DLVAHDRSSI RPSKNIRLDE VQRGGPQNLG CTPKDCRNYI  120
LKSRNFEMQE GDAQSLLNFF REIQAAYEQF HDAICFDTTY LVNQYNMPCA SFVGINHHRQ  180
SILLGCALMS HEDIDSYKLV FRTWLDAMGN VHPDAIITDQ CQSISGVRPS KIARAEFKSM  240
VLDSITVEVF ERKWAEYISR YNLHIRNWFN KLYSEKEKWV PVYLDMYFWG GMLFTQRSEG  300
MHAFFDGYIT RQSTFRMFVH QYELAIRAKH EKELEAEYRS KGFQIVCESM FKWEQQTIQC  360
YTRTIYEIFQ DTAKKIVSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793957.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7XPG3	0.0	A0A1U7XPG3_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009793957.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-56	FAR1-related sequence 5