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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009792736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 60628.2 Da PI: 6.4078 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 427 | 1.5e-130 | 174 | 544 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cAeav++ d + a+ l++ l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l+++e + ss+ l++++++++++P++kf++ XP_009792736.1 174 LKDLLLACAEAVAEADISTAEVLMNVLEQRVSVSGEPMQRLSAYMLEGLRARLLSSGSTIYKKLKCNEPT---SSDLLSYMQVLYHICPYYKFAY 265 5789*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN I ea+ +e+++HiiDf+i qG QW+ Ll+ La Rp+gpp +R+Tgv++++s + l+ +gerLak+Ae++gv+fef+ +a + XP_009792736.1 266 MSANVVIGEAMRNENTIHIIDFQIAQGSQWMFLLHDLARRPGGPPYVRVTGVDDSQSAhaRGGGLKLVGERLAKVAESCGVSFEFHG-AAMSGCR 359 ******************************************************9988889999***********************.89999** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +ele+L+v++gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a +r++++ri XP_009792736.1 360 VELENLQVRHGEALAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESTDAARSRDDKQRI 454 **************************************************************************************9******** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + E+++++r++vn++acega+r+erhe ++kWr+rl +aGF+p++ls ++ +++k +l++++ + y++ e+++ l+lgWk+r+L + SaWr XP_009792736.1 455 SAEEHCIARDVVNIIACEGADRVERHEPFGKWRSRLVMAGFTPISLSPSVGETIKDMLKEYSPN-YKLAESQEVLYLGWKNRALATSSAWR 544 **************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.302 | 148 | 525 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-128 | 174 | 544 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MQASQGPRRS GDVHRLYHQP MQQVQQYYTP YQAVDNNIYN DSSSSGTQFS FQTQNEQVFT 60 LDSLPATDYA IYDAAPSVSV SSNRSPFSPQ CSQSYISDPH HSFDNTCGSP VSGCSGVDDG 120 NGMKHALWEL KNKLRGPESD IDDSSSCSFN GVFSKPSSLT KRNQVLDIAS RLDLKDLLLA 180 CAEAVAEADI STAEVLMNVL EQRVSVSGEP MQRLSAYMLE GLRARLLSSG STIYKKLKCN 240 EPTSSDLLSY MQVLYHICPY YKFAYMSANV VIGEAMRNEN TIHIIDFQIA QGSQWMFLLH 300 DLARRPGGPP YVRVTGVDDS QSAHARGGGL KLVGERLAKV AESCGVSFEF HGAAMSGCRV 360 ELENLQVRHG EALAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV TLVEQESNTN 420 TAPFLPRFRE TLDYYTAMFE STDAARSRDD KQRISAEEHC IARDVVNIIA CEGADRVERH 480 EPFGKWRSRL VMAGFTPISL SPSVGETIKD MLKEYSPNYK LAESQEVLYL GWKNRALATS 540 SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-62 | 181 | 543 | 25 | 377 | Protein SCARECROW |
5b3h_D | 8e-62 | 181 | 543 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792736.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Refseq | XP_016448345.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A1S3Y8A3 | 0.0 | A0A1S3Y8A3_TOBAC; scarecrow-like protein 13 | ||||
TrEMBL | A0A1U7XSY6 | 0.0 | A0A1U7XSY6_NICSY; scarecrow-like protein 13 | ||||
STRING | XP_009792736.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |