PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792228.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 442aa    MW: 47762.2 Da    PI: 7.7137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20222271255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_009792228.1 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-33222280IPR001471AP2/ERF domain
PfamPF008473.9E-14222271IPR001471AP2/ERF domain
PROSITE profilePS5103225.712222279IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22222280IPR016177DNA-binding domain
SMARTSM003805.1E-38222285IPR001471AP2/ERF domain
PRINTSPR003671.3E-11223234IPR001471AP2/ERF domain
CDDcd000182.84E-15230281No hitNo description
PRINTSPR003671.3E-11245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MCLLKVANPR KSSEYVRFTD TSDSETTTTT AAEGGAQPYG QGDQFFEEMI QQQIHQEADY  60
LLSTSSAMPM FTGYSQTREM STMVTALTHV VSCQSYRPDI SGSVTSSFGG GGSGIYSANS  120
PSSAYSSSSS GSRAGQKRSR DQEESVTQIL EQSHHGVYGG FGEFRAGLPS SSVKAATSMV  180
APSNTTISTI TTVPAFTTTT TTTTTAAAGG STEETGGERR RRYRGVRQRP WGKWAAEIRD  240
PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVSRLLPQLQ ASQPTTRLAI  300
SSSSTSASSQ LQFMAPISQP TAFFQPHQQP IQSSDMTRDY WEYSQLLQNP GDFFDQQQPS  360
GLLEQMFFAS SRAVLHSNTT SSLGNSAASS PSYPLLFSGQ QSSYYRPQTN QIQGNSSSSN  420
SSSSNISAPF WSSSSHYPPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23221282163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792228.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
RefseqXP_016507835.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1S4D3240.0A0A1S4D324_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1U7XMV60.0A0A1U7XMV6_NICSY; ethylene-responsive transcription factor ABR1-like isoform X2
STRINGXP_009792227.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-16ERF family protein