PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791087.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 512aa    MW: 57805.5 Da    PI: 5.131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-10179200526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G +CkF+H+
  XP_009791087.1 179 DCPYFMKTGVCKFGFNCKFNHP 200
                     7********************8 PP
2zf-CCCH31.33.6e-10225249327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009791087.1 225 QIECKYYLTSGGCKYGKACKFNHSR 249
                     568********************95 PP
3zf-CCCH40.93.5e-13270294226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009791087.1 270 GEKECPYYMRTGSCKYGSNCRFHHP 294
                     7899********************9 PP
4zf-CCCH19.91.3e-06406432127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +tG Cky  +CkF+H++
  XP_009791087.1 406 PGQPDCSYFIKTGDCKYKFNCKFHHPK 432
                     5789*********************96 PP
5zf-CCCH36.11.1e-11454478327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009791087.1 454 QTVCSFYSRYGICKFGPACKFDHPE 478
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.5E-6173201IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549174202IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4180199IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4222249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474222250IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7226249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5227251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5228250IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624268296IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11270294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7270295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5274293IPR000571Zinc finger, CCCH-type
SMARTSM003560.065405432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962405433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5410434IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6451478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131451479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5452479IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9454478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4456478IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEEAIEQQQI QNQNQNQSPK HTQEELGFES QTPQTSLLPS DLNIQNPNQN QPNENDDEDE  60
MAMQIICEDL RDLVLNQALD KEREKEDLHH LDPEENGKIN ENEVENVEGN DDGWGDVGEY  120
GDYHYDEENR SGSVNGNDNE NDGEKENGYE GDSKEGGGFN ANNRIKKKFI YPLRPDAQDC  180
PYFMKTGVCK FGFNCKFNHP SRRKYQQGTK EKGKQREESQ ERPGQIECKY YLTSGGCKYG  240
KACKFNHSRE KGSISPIAEF NFLGLPIRPG EKECPYYMRT GSCKYGSNCR FHHPDPTTVA  300
GADRSSGYNN GGAVPVQAAS HPAASSWSSP RALNDTAPYV PMMYPPTQGI PSPNTEWNGY  360
QAPVYPTAEK RLPTPPAFGM NNPATKTNYY PRPLQPLLVE EYPERPGQPD CSYFIKTGDC  420
KYKFNCKFHH PKSRVSKANS STLNEKGLPL RPDQTVCSFY SRYGICKFGP ACKFDHPENY  480
VGSGSSTEYG FDQPQQSQMS LGWQGRELEV DR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791087.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ9STM41e-121C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1U7XG910.0A0A1U7XG91_NICSY; zinc finger CCCH domain-containing protein 67 isoform X2
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]