PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009790944.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 423aa MW: 46298.6 Da PI: 6.2352

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009790944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	5.9e-06	313	351	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_009790944.1 313 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 351 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.982	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0044	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-6	312	355	No hit	No description
SuperFamily	SSF47459	1.09E-10	312	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-9	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MAEEFQLGNG NWWDNTSISR NSAPTAASTT VSNMSSNYSN WQNTETQVDI KPRTFLDSGS 60 VLSESSGCGS SSGRGGSGGG GGGVLSAENN FQMMGLGLTS QPHDWNQSLL RGEKAESGFS 120 SILQQGDLNS NTNNYQLEAS NSQQDHHWNR QKIYSGNSEN SSSVDDYKQM NFVYNINPSN 180 NYGLSQESAA HDNHVMHSST TSSWSKFPQF LRTSPPEQQP LQPSMPPPPP HSQLHFSNNT 240 PFWNASAAAM NDVPSTLFPS NLHPQLPIPT IDEKAKNMGE VRDINKMSKK TSSETTNKRP 300 RDETPSPSPA FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF LHDQIGALGA 360 PYMKSGSSAM QHQQSSNKSE DAEGQNQDLR SRGLCLVPVS STFPVTHETT VDFWTPTFGG 420 TFR

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MAEEFQLGNG NWWDNTSISR NSAPTAASTT VSNMSSNYSN WQNTETQVDI KPRTFLDSGS  60
VLSESSGCGS SSGRGGSGGG GGGVLSAENN FQMMGLGLTS QPHDWNQSLL RGEKAESGFS  120
SILQQGDLNS NTNNYQLEAS NSQQDHHWNR QKIYSGNSEN SSSVDDYKQM NFVYNINPSN  180
NYGLSQESAA HDNHVMHSST TSSWSKFPQF LRTSPPEQQP LQPSMPPPPP HSQLHFSNNT  240
PFWNASAAAM NDVPSTLFPS NLHPQLPIPT IDEKAKNMGE VRDINKMSKK TSSETTNKRP  300
RDETPSPSPA FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF LHDQIGALGA  360
PYMKSGSSAM QHQQSSNKSE DAEGQNQDLR SRGLCLVPVS STFPVTHETT VDFWTPTFGG  420
TFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790944.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A1U7XVH1	0.0	A0A1U7XVH1_NICSY; transcription factor bHLH123-like
STRING	XP_009790944.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-70	bHLH family protein