PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009789826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 362aa MW: 41165.1 Da PI: 8.9337 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.3 | 3.9e-13 | 59 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_009789826.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDIAAQRFRG 107 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99.7 | 1.7e-31 | 189 | 284 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F +++ +++l XP_009789826.1 189 FEKAVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVCFGRSNGVDKKL 282 89*************************964.45689*************************************************9876666666 PP EE CS B3 93 vv 94 ++ XP_009789826.1 283 YI 284 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-7 | 59 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-24 | 59 | 114 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-16 | 59 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-19 | 60 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 60 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-26 | 60 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-40 | 182 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-31 | 187 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-28 | 188 | 272 | No hit | No description |
Pfam | PF02362 | 6.3E-29 | 189 | 286 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-22 | 189 | 290 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.847 | 189 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDGSCCIEQE STTSDSLSFA QALISTRLSR MGSGTSCVII DAELNCTIEA ESNKKLASSR 60 FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDI AAQRFRGKDA VTNFKPLCDS 120 DKVEIEISFL NARSKAEIVD MLRKHTYNDE LEHSKKVYSF DKNDKRGCEN ALVNSFDVEN 180 MSKARELMFE KAVTPSDVGK LNRLVIPKQH AERYFPLENN SKGMLLNLED MNGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV CFGRSNGVDK KLYIDLKARI SSTITPILDK 300 IQVQVQPVKM VRLFGVNICK VQDVNNIVVE NNMSSCSGGK RTREMELLAF ECRKKQRVID 360 VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-55 | 186 | 294 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789826.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9C6M5 | 1e-135 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A1U7XJN3 | 0.0 | A0A1U7XJN3_NICSY; AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
STRING | XP_009789826.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-138 | RAV family protein |