PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 30646.1 Da PI: 6.3046 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 165 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009784039.1 165 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 212 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-17 | 159 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.80E-9 | 159 | 216 | No hit | No description |
PROSITE profile | PS50888 | 15.459 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-18 | 161 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 165 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-10 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTGLLEAAAN 60 SVNESTVTEQ SGRSGGGTAA VRQRDMNSED DSSKLVSTSD ANDLQDGSVA KRQKASESKE 120 ENGGSKVEAE SSSRTVNKGT EQSSKPEPPK DYIHVRARRG QATDSHSLAE RARREKISER 180 MKILQDLVPG CNKVIGKALV LDEIINYVQS LQRQVEFLSM KLEAVNSRMS HPVETFPSKD 240 VSIWFSFSLS QVAGRWVQVY VDLRQTLYLF YLLILSNFWS R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022012 | 2e-65 | KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784039.1 | 0.0 | PREDICTED: transcription factor bHLH79 isoform X1 | ||||
Refseq | XP_016453733.1 | 0.0 | PREDICTED: transcription factor bHLH79-like isoform X1 | ||||
Swissprot | Q9LV17 | 4e-74 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A1S3YNP7 | 0.0 | A0A1S3YNP7_TOBAC; transcription factor bHLH79-like isoform X1 | ||||
TrEMBL | A0A1U7XAT5 | 0.0 | A0A1U7XAT5_NICSY; transcription factor bHLH79 isoform X1 | ||||
STRING | XP_009784039.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 3e-76 | bHLH family protein |
Publications ? help Back to Top | |||
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