PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783716.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 523aa MW: 58284.5 Da PI: 6.6463

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.2	3.8e-19	329	374	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le+l+++F ++++dAA++Lgv T+LKriCR y I RWP+ k XP_009783716.1 329 YGITLEVLKQHFGKKLTDAANSLGVARTTLKRICRDYEIYRWPRVK 374 579****************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.526	312	401	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-17	331	376	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-17	424	510	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-15	431	510	No hit	No description
PROSITE profile	PS51745	16.006	432	513	IPR000270	PB1 domain
SMART	SM00666	7.2E-14	432	513	IPR000270	PB1 domain
Pfam	PF00564	3.9E-14	433	511	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MNRLFLVTFS SLNKMANPNN VELEAAKLLH KLIQESKDEP TKLATKLYEI LRHMRSHGKG 60 NSIPFKVVAR AVETLVKQHS LDIEALASSH LPMTVGAQVG EVATSQVAGS LQRVEVTRDM 120 TVNFLGNENT TVNFLGNEMV KADVYASNSA VSGSSGSGHG IYRVSGTHIS GHPRSATEAT 180 QDKGDAMQPG ILFDMFNSFE IGQYQPAAVA TLDNGDTMQF DAFFDMQDFF EFGQPLSATK 240 DKGDANLVDS NQTTTTSIAD NRRHSPNLDD DVARSLPGLE LGIGTQIVQL GSEHHQVDDV 300 EVDARDLQRN VVHADLEKQN KTKRIKREYG ITLEVLKQHF GKKLTDAANS LGVARTTLKR 360 ICRDYEIYRW PRVKSRKHNC SLSQAELLQV VDRQPSDSGP RHQQYVDFSP GSGPKSATNS 420 KELHVTMQSE NFISVKVTYG NRTVRFPLSF SSGKRDLEEE VEKRIKLVGN SSIRYEDEEK 480 DFILITCDSD LHYAMHTLRS LGRTIIKMLV EIEPDYNHII DSC

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MNRLFLVTFS SLNKMANPNN VELEAAKLLH KLIQESKDEP TKLATKLYEI LRHMRSHGKG  60
NSIPFKVVAR AVETLVKQHS LDIEALASSH LPMTVGAQVG EVATSQVAGS LQRVEVTRDM  120
TVNFLGNENT TVNFLGNEMV KADVYASNSA VSGSSGSGHG IYRVSGTHIS GHPRSATEAT  180
QDKGDAMQPG ILFDMFNSFE IGQYQPAAVA TLDNGDTMQF DAFFDMQDFF EFGQPLSATK  240
DKGDANLVDS NQTTTTSIAD NRRHSPNLDD DVARSLPGLE LGIGTQIVQL GSEHHQVDDV  300
EVDARDLQRN VVHADLEKQN KTKRIKREYG ITLEVLKQHF GKKLTDAANS LGVARTTLKR  360
ICRDYEIYRW PRVKSRKHNC SLSQAELLQV VDRQPSDSGP RHQQYVDFSP GSGPKSATNS  420
KELHVTMQSE NFISVKVTYG NRTVRFPLSF SSGKRDLEEE VEKRIKLVGN SSIRYEDEEK  480
DFILITCDSD LHYAMHTLRS LGRTIIKMLV EIEPDYNHII DSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783716.1	0.0	PREDICTED: uncharacterized protein LOC104232264 isoform X1
Refseq	XP_016440590.1	0.0	PREDICTED: uncharacterized protein LOC107766340 isoform X2
TrEMBL	A0A1S3XKS7	0.0	A0A1S3XKS7_TOBAC; uncharacterized protein LOC107766340 isoform X2
TrEMBL	A0A1U7X221	0.0	A0A1U7X221_NICSY; uncharacterized protein LOC104232264 isoform X1
STRING	XP_009783716.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15579	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-15	Nin-like family protein