PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783669.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 303aa    MW: 34962.9 Da    PI: 8.0731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.33.3e-1029107291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+  GFsv k++s+k    ++    t++C     r+ + ++          +  +Cka+l   +++ g w+++k++++ nH+l p
  XP_009783669.1  29 FYKEHARLRGFSVIKRNSNKIG-GDTARYITYCCDWTRIRKIKFTT----------KSNNCKAMLAAVLDDFGCWRISKVVHDQNHDLLP 107
                     9****************99984.44467778888887777776555..........7789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-829107IPR004330FAR1 DNA binding domain
PfamPF105519.0E-19228302IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MENEFTEEDF IVGPISGMRF RDKDTLFAFY KEHARLRGFS VIKRNSNKIG GDTARYITYC  60
CDWTRIRKIK FTTKSNNCKA MLAAVLDDFG CWRISKVVHD QNHDLLPSVS RLMAGHMSAC  120
DSLKRDLVAH DRSGIRPSKN IRLAEVQHGG PQNLGFTPKD CRNYILKSRN FEMKEGDAQS  180
LLNFFHEIQV KDREFFYSIN VDNIGRLRNV VWVHSHCKAA YEQFHDAICF DTTYLVNRYN  240
MPCASFVDIN HHRQSILLGC ALMSHEDIDS YIVFRTWLDA MGNVQRDAII TDQCQSIKAA  300
IAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783669.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like
TrEMBLA0A1U7X9R60.0A0A1U7X9R6_NICSY; protein FAR1-RELATED SEQUENCE 8-like
STRINGXP_009783669.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-42FAR1 family protein