PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782985.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 291aa    MW: 31843.4 Da    PI: 7.3295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023199221123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009782985.1 199 HECSICGAEFTSGQALGGHMRRH 221
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-8115138No hitNo description
PfamPF139124.4E-10115140IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305116143IPR007087Zinc finger, C2H2
SMARTSM003550.47116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-8194221No hitNo description
PfamPF139129.7E-13198222IPR007087Zinc finger, C2H2
SMARTSM003550.01199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723199221IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MILENKEYTM EFVQMQENVD HHMNMVIKRR RTKRPRPPSP LALTIATSSC STVEGASGGG  60
GSGGELDGHV ANSSSLSNCG IDQFAKNSEE EDMANCLILL AQGHNQKSQS SSLDVFPCKT  120
CNRCFSSFQA LGGHRASHKK PKSTTLEEIK NSKPIEQVAT CLKLNEDHVT TLSLQIPSNN  180
NNSNNNNNNS SGKNKTRVHE CSICGAEFTS GQALGGHMRR HRPLPNSITI AASSTSNEES  240
HDQTKNTRNF LSLDLNLPAP EDDHREITKF SFGSKEQVIV FSASPLVDCH Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782985.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_016507626.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S4D2L90.0A0A1S4D2L9_TOBAC; zinc finger protein ZAT5-like
TrEMBLA0A1U7X9730.0A0A1U7X973_NICSY; zinc finger protein ZAT5-like
STRINGXP_009782985.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-50C2H2 family protein