PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 360aa MW: 40263.6 Da PI: 8.3317 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.5 | 7e-42 | 149 | 225 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl++akeyhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrr+L++hn+rrr++q+ XP_009780510.1 149 CQVEGCNLDLTSAKEYHRRHRICEAHSKSPMVIVAGMERRFCQQCSRFHELSEFDDNKRSCRRKLSDHNARRRRSQP 225 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-35 | 144 | 210 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 146 | 223 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-39 | 147 | 227 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-32 | 149 | 222 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDWNMKSHQL EWGWDNNISI CSCSGLEFCR HAETFINEKE VNKAENIKHI YSVVDRFSSY 60 SLDHGSSVKS SAEESNYGIV GSVPGFVSAE RKEKYSTSGT CTRPGESSIG LNLCPANNET 120 VTNYPVLPLS STTAKRCRGS YHLMQNPYCQ VEGCNLDLTS AKEYHRRHRI CEAHSKSPMV 180 IVAGMERRFC QQCSRFHELS EFDDNKRSCR RKLSDHNARR RRSQPEANHF SSTGRPSSFH 240 DQQSRTSGSL SGSSSSTSNS MGKSSCRPKN IRGLNTSTSD YKLDAASNLP RRAHSLLSRN 300 SLGLYDPTHT SMEQLIMPAS VGESQPFVPV TPNWQQVSSE HFPADHQVPF YSPHCFNGSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-27 | 149 | 222 | 11 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 221 | RRKLSDHNARRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780510.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_016441061.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A1S3XM94 | 0.0 | A0A1S3XM94_TOBAC; squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A1U7X220 | 0.0 | A0A1U7X220_NICSY; squamosa promoter-binding-like protein 12 | ||||
STRING | XP_009780510.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13644 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-41 | squamosa promoter binding protein-like 2 |