PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009778880.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 199aa MW: 22733.2 Da PI: 4.3696

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.7e-09	15	37	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia+ ++ gRt++++k++w++ XP_009778880.1 15 RWAKIAEQLP-GRTDNEVKNYWRT 37 4*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.437	1	43	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	14	38	IPR009057	Homeodomain-like
CDD	cd00167	6.58E-7	14	37	No hit	No description
SuperFamily	SSF46689	3.43E-7	15	48	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-7	15	37	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MCIYTTLNIY LLIKRWAKIA EQLPGRTDNE VKNYWRTKVQ KHAKQLHCDV NSLQFRDFLY 60 YQWLPRLTEQ IRSTSSPQEQ LMSSSSSTSH NNSTEVILEN FTFLQAGINE STNITCPINQ 120 STPNVAQVTS LIDDNIWNLS SGNWTSSGFE DEFYDLSSTD MAIYSNSQDQ CHSWASAGSE 180 VLLPDETLGL SDVDLWLFP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778880.1	1e-147	PREDICTED: transcription factor MYB24-like
TrEMBL	A0A1U7WXB6	1e-145	A0A1U7WXB6_NICSY; transcription factor MYB24-like
STRING	XP_009778880.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-26	myb domain protein 78