PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 137aa MW: 15757.3 Da PI: 11.152 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.6 | 2.6e-15 | 28 | 107 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+A+ GF ++k++s+k+ + + ++ C ++ k+++++ +++r +C+a+++ ++e++g w+v+k++++HnH+l p XP_009778050.1 28 DFYKEHARLSGFCIVKRTSNKK-GGDIVRYVQYGCGRSRKPRNKH----------VTKRRNCRARINGNLEENGSWRVSKVVKKHNHQLEP 107 6****************99998.56668999****9998877755..........55999****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-12 | 28 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPNEFNEEDL IIGPITGMRF SSKDVMFDFY KEHARLSGFC IVKRTSNKKG GDIVRYVQYG 60 CGRSRKPRNK HVTKRRNCRA RINGNLEENG SWRVSKVVKK HNHQLEPALS RLMAGHISLN 120 KSLKRTLATK YIAGLRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778050.1 | 4e-99 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7WUZ3 | 1e-97 | A0A1U7WUZ3_NICSY; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009778050.1 | 2e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-11 | FAR1 family protein |