PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777959.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 311aa    MW: 34509.7 Da    PI: 6.9306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-1394137855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  XP_009777959.1  94 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 137
                     6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.71E-1685148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.92286136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1590148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-1391141No hitNo description
SMARTSM003532.4E-994142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1094137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.89E-5228292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNEGSGRDCL IWDNQGWSFL NSNNLDGSEE KFAGDKLSDP NTSHDQPRTA AKETKAAARG  60
RKRSASGRKE SDEVKCGGIG GGEGESDHEI HIWTERERRK KMRNMFSNLH ALLPQLPPKA  120
DKSTIVDEAV NYIKTLQNTL QKLQNQKLEK LHCLTATMNS NDLSIITSQK LLESNNRELF  180
LADQGSTSNS TAITPTNNNN NNNTTPFLNI PTVFQTWTSP NVILNVCGEE AHISICCLKK  240
PGILSGICFV LEKYKIGMVS AQVSSDHYRS LYMIQTHATG GSTLNQFSEA LTVEEIYKQA  300
AEEIMLWATS K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375861e-36AC237586.1 Populus trichocarpa clone POP031-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777959.10.0PREDICTED: transcription factor bHLH95-like
RefseqXP_016459007.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1S3Z4870.0A0A1S3Z487_TOBAC; transcription factor bHLH95-like
TrEMBLA0A1U7WTE10.0A0A1U7WTE1_NICSY; transcription factor bHLH95-like
STRINGXP_009777959.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-42bHLH family protein