PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009777843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 426aa MW: 47486.5 Da PI: 4.9919 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.5 | 1e-33 | 175 | 267 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++rlws+eD++++L+G+ dfka++g++p + d++af++f+k++++++vsksq+++K+rrLKkKf ++vk ++p+fsk+hd +fe+skkiW XP_009777843.1 175 PSRLWSDEDQLAILKGMADFKAQKGSEPNAtDMSAFHDFIKGKLQVEVSKSQVTDKLRRLKKKFLTNVKI---SDDPVFSKPHDYLMFEFSKKIW 266 68************************99988**************************************9...99******************** PP DUF573 97 g 97 g XP_009777843.1 267 G 267 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.8E-29 | 176 | 267 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MAPKSKSRLV DQPPSASSSE EQDPQQAEES QEEEEEAAQS EEEEEEESGE DESDDEEEPK 60 TAPPLEKKPT SQKPLQTPQN KPQSSSSESG TEDGSGSDSD SESGQSQPSP SASDFTVKPS 120 VPTAKSPSKP FSKRPQETQQ QQALKEKHSR PNKKPKISEE DSKVSEEKKS AATTPSRLWS 180 DEDQLAILKG MADFKAQKGS EPNATDMSAF HDFIKGKLQV EVSKSQVTDK LRRLKKKFLT 240 NVKISDDPVF SKPHDYLMFE FSKKIWGDAG TSNTNGINEI VNNGTNGKAK KTVDVVKRST 300 AEPKKSAKVS TLTKLKDDEK PKEDEKRPSV KEVDKEDVVV KVDDRQDFRS KYPNLAASFS 360 LPAMSSIFPN GVDIFKENMS LIASDKAKVL EEKWKKLHDD EDDLMLKRLD LIREHYKLVV 420 DARRGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253591 | 9e-38 | AC253591.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence. | |||
GenBank | AC253611 | 9e-38 | AC253611.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence. | |||
GenBank | HG975519 | 9e-38 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777843.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Refseq | XP_016481909.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Swissprot | Q94IK2 | 1e-134 | STK_SOLTU; STOREKEEPER protein | ||||
TrEMBL | A0A1S4AZB4 | 0.0 | A0A1S4AZB4_TOBAC; mediator-associated protein 1-like | ||||
TrEMBL | A0A1U7WGR3 | 0.0 | A0A1U7WGR3_NICSY; mediator-associated protein 1-like | ||||
STRING | XP_009777843.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2369 | 20 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 9e-23 | DNA-binding storekeeper protein-related transcriptional regulator |