PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009777174.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 209aa MW: 23196.4 Da PI: 7.314

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009777174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.9	4.8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+G+vg++++++++++q+ XP_009777174.1 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRADLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWHVCQV 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_009777174.1 97 AVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.043	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRADLMS FISAVPENQR 60 PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WHVCQVAVET VLRGGTLSPI PELFGKSSEL 120 DEESECTNVF KLLNHTRSKM QKRRRSSDEA AAKVLQLENL DLSLLTRGFQ SEIVYSPSRN 180 SEESVTTTCF ESSLGDHQGK QPRLLSLFT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777174.1	1e-154	PREDICTED: LOB domain-containing protein 38-like
Refseq	XP_016433338.1	1e-154	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	3e-75	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S3X0X3	1e-153	A0A1S3X0X3_TOBAC; LOB domain-containing protein 38-like
TrEMBL	A0A1U7WR68	1e-153	A0A1U7WR68_NICSY; LOB domain-containing protein 38-like
STRING	XP_009777174.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-77	LOB domain-containing protein 38