PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775826.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 339aa    MW: 38182.4 Da    PI: 9.4826
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21.1e-1836129186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsessstcpyfdqle 86 
                     +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ +  r  g+   ++++qC++k+e+l+kry+ + +++      r+ +  s +++f++++
  XP_009775826.1  36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCSAWVLFKRMD 129
                     8************************************976555665589*****************9988875411112444455667777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2035131No hitNo description
PROSITE profilePS500906.1443797IPR017877Myb-like domain
SMARTSM005952.3E-844136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MATLSSSTQD FSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN  60
LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS  120
AWVLFKRMDT MERGPNALSS DEEADEDVED YRQNSVKLIG DLYGNNNVNT NNNRSSSSFQ  180
GVVSNGGGGF RIRIPGMPVT APPMAKPYSR IEDSGVENPS NFGPNNFGPG KMFRGHGFVK  240
KADMGKRVAG EGVGPVREKK KEDPMGEMVV AIKMLGDGFV RMERMKMDMA RELEEMRMEM  300
EMKRTQMILE SQQRIVEAFA QALSEKNHKK PKRMPTHEC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775826.10.0PREDICTED: uncharacterized protein LOC104225672
RefseqXP_016484160.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S4B5D80.0A0A1S4B5D8_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7WF010.0A0A1U7WF01_NICSY; uncharacterized protein LOC104225672
STRINGXP_009775826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-49Trihelix family protein