PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 467aa MW: 53446.7 Da PI: 5.3653 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie+ +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g+l ys XP_009772504.1 10 KIESLTNRQVTFSKRRNGILKKIYELSVLCDVDVAIIMFSPSGRLTHYS 58 59********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.703 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-25 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KIYELSVLCD VDVAIIMFSP SGRLTHYSRK 60 RRIEDVLSEL VYLPDSERGF YINNKESVLW NLRKIEIQDK FCDIERISPA YLNTNDTAKK 120 IQEEINGLHC KLEEAEGLLR IFEPDTKKIT SLHELDLCEK RLQVALNQVR QRMEQLSNNH 180 NTSSYEDNME QINALLQYID NTQTEDTKPS LEESPYDLWL ELEDYSYTNY INDNNNSHLY 240 AASETSSLTQ SSMNLSSPII YDAISQTSIS GVTNYHKEGT FSSLTDENFK QSQHSTRTFP 300 TLTLQTSFKF AKPEMETPTS ALRPVAPYLH VEATAASSQQ PVSSDYYKEN NELDCRFQPK 360 VTTSNYQMSQ KSTAEGSFSS LTYESFKQSQ CSTRIFPPIA PLQTSFSFAT PEMETPTSAL 420 RPVAPYLQAE AAASSNQQLP SNNIEEENHE ISWFQPQMKK SKYHHLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 3e-62 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772504.1 | 0.0 | PREDICTED: transcription factor CAULIFLOWER-like isoform X1 | ||||
TrEMBL | A0A1U7WCY1 | 0.0 | A0A1U7WCY1_NICSY; transcription factor CAULIFLOWER-like isoform X1 | ||||
STRING | XP_009772504.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13070 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-43 | AGAMOUS-like 104 |