PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009771804.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 246aa MW: 28645 Da PI: 6.5958

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009771804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2e-19	56	140	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA GF +rk +++++ rn+e t+ f Cs+egk+ ++ +++++r e r+gC a++k k + ++kw+v +++ eHnH++ XP_009771804.1 56 YNSYALAKGFGIRKGAKTYN-RNKELTRCLFLCSCEGKSLLYSNY-LERKHQRLEYRCGCMARIKFKIS-NEKWKVFEFSDEHNHPMI 140 **************9998.7888************9999.89999************99.*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-16	56	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEDHSAHEDI NFEGEYYTAN DQDCSTFVHN GSNINNDFTI KIGMKFGSED ESYVAYNSYA 60 LAKGFGIRKG AKTYNRNKEL TRCLFLCSCE GKSLLYSNYL ERKHQRLEYR CGCMARIKFK 120 ISNEKWKVFE FSDEHNHPMI EENLRHFILS GQNLTTATKD ILSSMVDAGI RTKKVVRYLQ 180 NEAGGIENAR FIEQDAHNFI QARKRSMINS GDAQTFVDRF MHMQSEDSNF FYSFQVDEDG 240 RMCNFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771804.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1U7WAW7	0.0	A0A1U7WAW7_NICSY; Uncharacterized protein
STRING	XP_009771804.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-21	FAR1-related sequence 5