PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771757.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 497aa    MW: 55035.1 Da    PI: 8.1654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18329428198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v F++++  +++
  XP_009771757.1 329 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIKIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVAFSRID-PGGK 421
                     99**************************555666777***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_009771757.1 422 LVMGFRK 428
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-30326432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-21326429IPR015300DNA-binding pseudobarrel domain
CDDcd100176.17E-24327428No hitNo description
SMARTSM010195.1E-22329429IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096329430IPR003340B3 DNA binding domain
PfamPF023625.7E-16329428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGSMICMNEV CRKTTSSEWR KGWSLKSGGF ANLCYNCGSA FENLTFCETF HMGDSGWREC  60
KKCGKHLHCG CIASKYLFEY LDFGGVGCIS CTRRFDGHSM RPMQVPADDF RNNTFGTNFI  120
QPLHVEKGVD ETNFEEGRLP TVNNITEISE PGQPFQSQKD ENNVSLGKTK QEKLLPVGDV  180
STCFSNLNQQ SIASLFREQD NSKPNQGVKE MYDTTNQPSL DFSLSTPVGC SSPGLSFPGG  240
GVEGREHEKT PPFQQGLRMR HILLKPPKPS PSFGSDSNKE LPSQTRIARP PAEGRGGRNQ  300
LLPRYWPRIT DQELRQLSGD LKSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPINQ  360
SDGLPIKIQD IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDT VAFSRIDPGG  420
KLVMGFRKAT NSVETQDPQS SYLPDGSGSA DTSFTGLTEN LNNGGRTSAD SVHRQVPVSE  480
KKIGFVLRVR VFPLVNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-713074362131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771757.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like
SwissprotQ6Z3U31e-136Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1U7VV920.0A0A1U7VV92_NICSY; B3 domain-containing protein Os07g0679700-like
STRINGXP_009771757.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-120high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]