PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771547.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 356aa    MW: 39962 Da    PI: 5.989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.7e-15171218355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h   Er+RR+r+ ++f  L +l+P++     kKl+Ka+iL  A++YIk+L+
  XP_009771547.1 171 QDHVLSERKRRERLTQCFISLSTLIPNL-----KKLDKASILGDAIKYIKQLE 218
                     568899**********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.253168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-13172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-18172233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18173236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-15173222No hitNo description
SMARTSM003537.9E-17174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDMSSATWWS EMEIMNMDDL QYVENCQTMT SSFDELPFNN NYPFSPCTYG IQAAGILEEK  60
PAFCNSRMGT EHQNTYFSSP SSSPPPSSSS PSVIFFCNTK SPSTHNYQEN YLNSSVKTEV  120
PSGPTTINFS SQTCPDSDYD DSQHLFQAMG FTAADITQKK STYSRTPLQA QDHVLSERKR  180
RERLTQCFIS LSTLIPNLKK LDKASILGDA IKYIKQLENQ VKSLEEETKK FSKEPVVAVK  240
RTGLLSTYVN SSSSEENSNI SSTNKSVPEI EVRAADGNAL IRIYCKKQAT IIKEIFSQVE  300
KFNLTIISSS VMPFGDISTY ITIVAKMDHQ LNMTAEYAAK RIRETIMKLI SSHIDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771547.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U7VUL20.0A0A1U7VUL2_NICSY; transcription factor bHLH18-like
STRINGXP_009771547.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein