PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771545.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 357aa    MW: 39628.8 Da    PI: 6.9068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13164211355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A+++Ik+L+
  XP_009771545.1 164 QDHVVAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIKHIKQLE 211
                     56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-11164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16165224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-13166215No hitNo description
SuperFamilySSF474592.88E-16166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDFSSAKWWA EMEAMSTDDH ALINHCQMMT QLDELPFNKP FSSSCTSYDI QPSHTAAGIL  60
DVKPPFCSYA TETQQMTSFS PPLNSSSVFS SCKFNSPSAN TVVQNHFENL NYTSVKTELP  120
SGTTLNFSSD DFGDSQNLMQ ALGFGAADIT IQKKSYNRTS LQAQDHVVAE RKRRERLTQR  180
FIALSTLIPN LKKLDKATVL GDAIKHIKQL EEQVKTLEEK AKKRNEEPVV AVKRPHLAST  240
TSDHYSSSSE DNVSSVSTDR PQPDIEVRAS DGNILVRIRC KKQTGIIKEI FSQVEKLKLS  300
IISSSVMPFA HTTTHITIIA QMGHELGMTA NNDVNRIRAA IMKLIGGQEE EAPLITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13165226870Transcription factor MYC2
5gnj_B4e-13165226870Transcription factor MYC2
5gnj_E4e-13165226870Transcription factor MYC2
5gnj_F4e-13165226870Transcription factor MYC2
5gnj_G4e-13165226870Transcription factor MYC2
5gnj_I4e-13165226870Transcription factor MYC2
5gnj_M4e-13165226870Transcription factor MYC2
5gnj_N4e-13165226870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771545.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016484893.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4B7W60.0A0A1S4B7W6_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7WBE40.0A0A1U7WBE4_NICSY; transcription factor bHLH18-like
STRINGXP_009771545.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-40bHLH family protein