PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769143.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 493aa MW: 57938.4 Da PI: 6.4373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.9	3.6e-09	95	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y+e+A+ F v k++s+k+ ++ t+ C + ++ + ++ + +Cka+l ++++g w+v+k++++HnH+l p XP_009769143.1 95 LYKEHARLREFFVIKRNSNKK-GGDTARYITYHCDRTRIHKIKFTT----------KSNNCKARLAAVLDDSGCWRVSKVVHDHNHDLLP 173 69********999999988.55558899**9999887655..........7789*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-7	95	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-14	294	356	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MTSDDSLLNE YEWVDVDSHD SFNNVVHLDD DDDEEEESDG EYHGEANDDE DQVLGNELEL 60 CDVDWEMENE FTEEDVVVGP ISGMRFRDKD TLFGLYKEHA RLREFFVIKR NSNKKGGDTA 120 RYITYHCDRT RIHKIKFTTK SNNCKARLAA VLDDSGCWRV SKVVHDHNHD LLPSVSRLMA 180 GHRFVCDSLK RDLLAHDRSG IRPSKNIRLA EVQHGGPQNL GCTPKDCRNY ILKSRNFEMQ 240 EGDAQSVFNF FCEIQVKDRD FFYLIDVDNI GRLRNMVWVH SHCKATYEQF HDAICFDTTY 300 LVNRYNMPCA SFVGINHHRQ SILLGCALMS HEDIDSYKFI LKLGLMPWEM FIQMRSQLIS 360 VRALSITVKV FERKWTEYIA RYNLHTRNWF NKLYSEKKKW IPVYLDVYFW ADMLSTQRSE 420 GMHAFFDGYI THQSTLRMFV HQYELAIRAK QEKELEAEYR SKGFQLCASQ CSSGRSRQFS 480 VIHVQCMNFL RHS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MTSDDSLLNE YEWVDVDSHD SFNNVVHLDD DDDEEEESDG EYHGEANDDE DQVLGNELEL  60
CDVDWEMENE FTEEDVVVGP ISGMRFRDKD TLFGLYKEHA RLREFFVIKR NSNKKGGDTA  120
RYITYHCDRT RIHKIKFTTK SNNCKARLAA VLDDSGCWRV SKVVHDHNHD LLPSVSRLMA  180
GHRFVCDSLK RDLLAHDRSG IRPSKNIRLA EVQHGGPQNL GCTPKDCRNY ILKSRNFEMQ  240
EGDAQSVFNF FCEIQVKDRD FFYLIDVDNI GRLRNMVWVH SHCKATYEQF HDAICFDTTY  300
LVNRYNMPCA SFVGINHHRQ SILLGCALMS HEDIDSYKFI LKLGLMPWEM FIQMRSQLIS  360
VRALSITVKV FERKWTEYIA RYNLHTRNWF NKLYSEKKKW IPVYLDVYFW ADMLSTQRSE  420
GMHAFFDGYI THQSTLRMFV HQYELAIRAK QEKELEAEYR SKGFQLCASQ CSSGRSRQFS  480
VIHVQCMNFL RHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769143.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7VS08	0.0	A0A1U7VS08_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009769143.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-52	FAR1-related sequence 5