PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766818.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 348aa MW: 37857.9 Da PI: 7.5955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009766818.1 129 YECKTCNRTFPSFQALGGHRASH 151 99**********99999998887 PP
2	zf-C2H2	13.4	0.00023	244	266	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_009766818.1 244 HECSICGSEFSSGQALGGHMRKH 266 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.9E-13	128	153	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.11E-8	128	151	No hit	No description
PROSITE profile	PS50157	10.658	129	156	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	129	151	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	131	151	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.11E-8	239	266	No hit	No description
Pfam	PF13912	8.1E-11	244	267	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.91	244	271	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	244	266	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	246	266	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
METSQDFPER SYAFKGKRSK RSRPSSPLDI AGTMVTSSSS AAGGSDDGGG DVYYSSAIVQ 60 YSPTTSTTQI STTCTSEEDE DMANCLILLA QSGRRKVQVV TEVKKEKISS RKFTEMVNTT 120 TGKAGFFVYE CKTCNRTFPS FQALGGHRAS HKRPKTIVEE KKSVTIPATA TATAMASAST 180 AMATARVGAD SLVENHNDHH IENDQEEGRF NKISSPSFSV QMVNNNNNKG IISHGNSNSK 240 PKIHECSICG SEFSSGQALG GHMRKHKPPT TATVTNTKVS TNTHIETISN FSESSHDVGT 300 NYKEEEKSTR NFLSLDLNLP APPEDDRRET KFEQSLVFSA APLVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

METSQDFPER SYAFKGKRSK RSRPSSPLDI AGTMVTSSSS AAGGSDDGGG DVYYSSAIVQ  60
YSPTTSTTQI STTCTSEEDE DMANCLILLA QSGRRKVQVV TEVKKEKISS RKFTEMVNTT  120
TGKAGFFVYE CKTCNRTFPS FQALGGHRAS HKRPKTIVEE KKSVTIPATA TATAMASAST  180
AMATARVGAD SLVENHNDHH IENDQEEGRF NKISSPSFSV QMVNNNNNKG IISHGNSNSK  240
PKIHECSICG SEFSSGQALG GHMRKHKPPT TATVTNTKVS TNTHIETISN FSESSHDVGT  300
NYKEEEKSTR NFLSLDLNLP APPEDDRRET KFEQSLVFSA APLVDCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766818.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1U7VKE9	0.0	A0A1U7VKE9_NICSY; zinc finger protein ZAT5-like
STRING	XP_009766818.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-49	C2H2 family protein