PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764167.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 285aa    MW: 32854.4 Da    PI: 5.4218
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-121260254
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     ++GVr +k +g++ AeI+  +     + k ++lg+f taeeA++ +   r+++e
  XP_009764167.1 12 LFPGVRSRK-NGKFCAEIKNpF-----NkKIIWLGTFITAEEAYEVYKSKRLEFE 60
                    689***888.8******99955.....34*********************99987 PP
2AP240.47.2e-13136182454
             AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     +GVr +k +g++ AeIr  +     + kr++lg+f taeeA + +   ++++e
  XP_009764167.1 136 SGVRKRK-WGKYYAEIRNpF-----NkKRIWLGTFITAEEAIQVYQSKKLEFE 182
                     8***999.**********55.....34**************999977777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-121152No hitNo description
SuperFamilySSF541711.37E-101162IPR016177DNA-binding domain
PROSITE profilePS5103212.9841269IPR001471AP2/ERF domain
PfamPF008476.7E-51260IPR001471AP2/ERF domain
SMARTSM003803.4E-51266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-121360IPR001471AP2/ERF domain
PROSITE profilePS5103215.554134197IPR001471AP2/ERF domain
PfamPF008471.8E-5135172IPR001471AP2/ERF domain
PRINTSPR003678.4E-6135146IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-13136181IPR016177DNA-binding domain
CDDcd000185.62E-17137174No hitNo description
Gene3DG3DSA:3.30.730.104.2E-16137183IPR001471AP2/ERF domain
SMARTSM003804.9E-8137188IPR001471AP2/ERF domain
PRINTSPR003678.4E-6157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKSQKRTQKK SLFPGVRSRK NGKFCAEIKN PFNKKIIWLG TFITAEEAYE VYKSKRLEFE  60
EKLKAKNAKK AIPAKSEELL MGQWIQISDD KEVYFSLELG VPIVDNYGFL LGEFSELDDL  120
RFYKVKTTTF SSKLPSGVRK RKWGKYYAEI RNPFNKKRIW LGTFITAEEA IQVYQSKKLE  180
FEEKMEEAKN AKMATFEKSE IETQTSDSSN GAEEKSNNSS VGEEQEIGQE NDEELFMGQW  240
IQISDNKEVY ISVKLGVPVI DNYGFLLGEL GELDDLSISV CDREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764167.10.0PREDICTED: uncharacterized protein LOC104215928
TrEMBLA0A1U7V7Q30.0A0A1U7V7Q3_NICSY; uncharacterized protein LOC104215928
STRINGXP_009764167.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-14ERF family protein