PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764107.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 558aa    MW: 62458 Da    PI: 7.6804
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.25e-20202258155
         G2-like   1 kprlrWtpeLHerFveaveqLGG..sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rW++eLH++F++   qL     +k +Pk+ile+m+ +g+t+e+v+SHLQk+R 
  XP_009764107.1 202 KNRMRWSKELHQKFLDTYYQLEAdsLDKVVPKRILEIMNEPGITRENVASHLQKFRN 258
                     78*******************642268*****************************5 PP
2Response_reg77.54.7e-26291391111
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl +dD+ + +++l ++l+k gy  v++++++ eale+l++++  +D++++D+   +mdG++ll+ i  e  ++p+i+ +a+g++ +++e +k G
  XP_009764107.1  29 VLTIDDNVVCLKVLGSLLQKCGY-TVTTTRNANEALEMLRKNKesFDIVITDVVRDDMDGFKLLEAIGLEM-DIPVIMTSANGDSRTIVEGIKSG 121
                     789********************.***************888889**********************6654.8********************** PP

                     ESEEEESS--HHHHHHHH CS
    Response_reg  94 akdflsKpfdpeelvkav 111
                     a+d+l+Kp+++e++ k +
  XP_009764107.1 122 ARDYLVKPVKMEDVKKII 139
                     ************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-3325151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.4E-3725166No hitNo description
SMARTSM004482.1E-2827139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.12128143IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2229139IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.16E-2630142No hitNo description
SuperFamilySSF466891.97E-14200262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-20200262IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-19202258IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTLATNEECL NPLLVNEKQK SQSTKGLKVL TIDDNVVCLK VLGSLLQKCG YTVTTTRNAN  60
EALEMLRKNK ESFDIVITDV VRDDMDGFKL LEAIGLEMDI PVIMTSANGD SRTIVEGIKS  120
GARDYLVKPV KMEDVKKIIQ HVTSKNTIED DQSPISGNDT NELVQESSTL PLKRKSKNSL  180
EYEDEETNTE SSGEESCPPR KKNRMRWSKE LHQKFLDTYY QLEADSLDKV VPKRILEIMN  240
EPGITRENVA SHLQKFRNGL KKQNAILNQD SHWKTDSNNI ARKPETSNNN MFANQKACFV  300
PQNQYEQVLL QQNALPVGNF APISTYSMVD NRVYRPVLDA TALSQPDLKC SRKKMDDELL  360
KIRRNYASFG SGQFYQDPVS DDLQKVISVC PYSSTPVSLN YIGATYQMFG DVSVSPQMTY  420
ISPFDSTGLV SSTPGQLEGG DLVSFNGRGV PDFGVGANAF PINFSLDDDL STMVQQPFAF  480
AMCYCWSPLF TSLRSHRTSG DREGLLSSTS CSHLFPRIRV VKIRSWGRLA ISSSRSRKLL  540
PIVHRVHVPF LAIAKGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3t6k_A6e-13291557134Response regulator receiver
3t6k_B6e-13291557134Response regulator receiver
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764107.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A1U7V7J70.0A0A1U7V7J7_NICSY; two-component response regulator ARR10-like
STRINGXP_009764107.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1548956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-60response regulator 12