PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762293.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 526aa    MW: 59072.8 Da    PI: 9.5936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001286106323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F r  nL+ H r H
  XP_009762293.1  86 CEVCNKGFQREQNLQLHRRGH 106
                     *******************88 PP
2zf-C2H214.69.8e-05161183123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_009762293.1 161 FKCEKCSKKYAVQSDWKAHTKTC 183
                     89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-783106No hitNo description
PROSITE profilePS5015710.9784106IPR007087Zinc finger, C2H2
SMARTSM003550.02584106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355270126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-7156181No hitNo description
SMARTSM0035588161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MIQGRRIFRV KQEEKREIRE KMNIQQEVFL QQQQYTLAPS SSMAQTQAQA TPTKKRRNQP  60
GTTPYPDAEV IALSPKSLMA TNRFLCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNTKEV  120
VKRKVYLCPE ITCVHHEISR ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVQSDWKAHT  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCV ALAQETARNP VPIHNLGNFS KMQNSTILDQ  240
KYPSSNSIDI LSLGNTKTTH NQQFNHNLID TSNIGSNTSN SFFFQESNQD YANIKPIHDL  300
MQQLPNFHNN NMFNLNFFQN NDGNSNMSSG ILGDQNISCS IPSLYGSQVQ NHNLNSTTTS  360
SVAPMSATAL LQKAAQMGST TSNISTTALL LKAFGNSTNG GNSSSSGTKS DHQVVNFGDN  420
FSDHSGNHLH DINGEAKNFG TPADIVNGVN AYGHDQNDYG GGYNAATKLN FEEQQHQLPP  480
QKKQLTRDFL GVGEIVRSMS GGFSSQREQQ QQQQSNQGFI SPENFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-32157218364Zinc finger protein JACKDAW
5b3h_F6e-32157218364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-114HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762293.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotQ8GYC11e-117IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1U7V7C00.0A0A1U7V7C0_NICSY; zinc finger protein JACKDAW-like isoform X1
STRINGXP_009762293.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.13e-99indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]