PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009761907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 25156.7 Da PI: 9.822 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.2 | 9.9e-27 | 51 | 139 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YneYA+++GFsvrk++ + +k+ g +t+++++C keg+r ++k+k +++++++etrt C+a+++v++e+ k+++tk+eleHnH+l+ XP_009761907.1 51 NYYNEYARRIGFSVRKEYVNINKKLGYVTSQKLTCFKEGFRGDDKRK-YQAKNPQKETRTRCQAHIVVTRESVRKYHITKVELEHNHPLV 139 69******************************************999.9***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-24 | 51 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPFELSSQLP NKPSTLLAVV ICVSIYVNSV RSIDREPALG LEFDDDESAF NYYNEYARRI 60 GFSVRKEYVN INKKLGYVTS QKLTCFKEGF RGDDKRKYQA KNPQKETRTR CQAHIVVTRE 120 SVRKYHITKV ELEHNHPLVS STMIHMLPSH RNLNDVQTHE IDLAEDAGLF SKGTFDFMSL 180 QAGGRANLGY TKLNHKNYLR TKRQKAMGQG EAGKLLVQIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761907.1 | 1e-166 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7V0X6 | 1e-164 | A0A1U7V0X6_NICSY; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009761907.1 | 1e-165 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-28 | FAR1-related sequence 5 |