PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009632013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 412aa MW: 45885.4 Da PI: 9.5658 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69 | 5.9e-22 | 114 | 157 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+C H+hrg rsrk +e+ XP_009632013.1 114 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHMHRG-RRSRKLVEA 157 79*********************************.688888876 PP | |||||||
2 | WRC | 58.8 | 9.4e-19 | 299 | 333 | 3 | 37 |
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 e rCrR+DGKkWRCsr++++ +k+CE H+hrg + XP_009632013.1 299 ELQRCRRSDGKKWRCSRNAVPRQKYCETHMHRGAK 333 668*****************************976 PP | |||||||
3 | QLQ | 42.1 | 2.6e-15 | 50 | 86 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT aQ+++L Q+ ++Ky+++++PvP +L + i++ XP_009632013.1 50 SVFTTAQFHELQLQAVIFKYIVSGLPVPFHLFFTIWN 86 67*****************************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-6 | 50 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.818 | 51 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.0E-11 | 52 | 85 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.678 | 114 | 158 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-18 | 115 | 152 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 19.778 | 297 | 341 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.0E-16 | 300 | 334 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MQPHLSSATP LSHSGKDERE KKEGSPPCIK LSLGYVVEEE EKVANAIAKS VFTTAQFHEL 60 QLQAVIFKYI VSGLPVPFHL FFTIWNTVSS SLGSAVINKL YPTLGRFDYA SMMDPEPGRC 120 RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKLVEASEY VTKSDDISIT SKRIKLNARS 180 DDPGSKCAPA SSKTSCLSST SRNYQNNSVE DSSAKPRPTN SCNSSEKQDN HMTFNRKDTT 240 TCIRTQSFNT DSKNIDFNRI SPSKANQKQS YGDARNSGGL VPVFGISAKS DLQHTTETEL 300 QRCRRSDGKK WRCSRNAVPR QKYCETHMHR GAKKIMAASD SVINVEPSKP SSYRFCHQVI 360 PKNDGTGINL NTSLSISTLP DPRNITEDDD SNSNSTSDAT TITDEIPAFV SH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009632013.1 | 0.0 | PREDICTED: growth-regulating factor 9 | ||||
Refseq | XP_016477805.1 | 0.0 | PREDICTED: growth-regulating factor 9-like | ||||
TrEMBL | A0A1S4AMG5 | 0.0 | A0A1S4AMG5_TOBAC; growth-regulating factor 9-like | ||||
STRING | XP_009632013.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7798 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 9e-36 | growth-regulating factor 9 |