PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631618.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 357aa    MW: 40845.6 Da    PI: 5.0395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36461382103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++
  XP_009631618.1  46 FLTKTYEMVDDSSTDHVVSWNRGGQSFVVWDPHAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEAFLRGNKQLLRN 131
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009631618.1 132 IRRRKTT 138
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.84E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3942135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.5E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMNPLYSVKE EYPGSSSGGG GGEPPPPVMT SPQPMEGLHD IGPPPFLTKT YEMVDDSSTD  60
HVVSWNRGGQ SFVVWDPHAF STSLLPRFFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEA  120
FLRGNKQLLR NIRRRKTTNS QLLPTEQALG PCVESGRFGF DGEVDRLRHD KQVLMMELVK  180
LRQQQQNTRS YLRSLEVRLQ GTQRKQQQMM NFLARAMQNP EFVQQLIRQK EKRKELEEAI  240
TKKRRRPIDQ GPSTLDVGGS SRPIKSEPLE FGEGSGFQVS ELEALALEMQ GFGRARRDQH  300
EEETREGLGQ FGNTDRELDE GFWEELFNDE DVSGNEDGEE EDVNVLAERL GFLDSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-254414018125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631618.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_016443432.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3XUR10.0A0A1S3XUR1_TOBAC; heat stress transcription factor A-7a-like isoform X1
STRINGXP_009631618.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-127heat shock transcription factor A6B