PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631535.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 327aa    MW: 36057.8 Da    PI: 6.794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14112163155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  XP_009631535.1 112 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 163
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.04E-13110167No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16110178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLDHENG LLTLPQDFYG  60
HEQQYSTASV PETTTTTTTR REKNLAVAQG GGRKKRRRRP KVCKNKEEAE NQRMTHIAVE  120
RNRRKQMNEH LAVLRSLMPE SYVQRGDQAS IVGGAIEFVK ELEHILQSLE AQKFLLLQQG  180
GGDGEGPSET TIAGDAVAAT GKYFPTPFAQ FFSYPQYTCS QLPSKYTSKS KAAIADIEVT  240
LIEAHANVRI LSRRRFRQLS KLVAAFPSLY LSVLHLNVTT LDPLVLYSIS AKVEEGCQLN  300
SADDIAGAVH HMLRIIEEEA ATLSCQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298RKKRRRR
29398KKRRRR
3112123RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612331e-97GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018622054.10.0PREDICTED: transcription factor bHLH71 isoform X1
SwissprotQ56XR05e-76BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A1S4ANW90.0A0A1S4ANW9_TOBAC; transcription factor bHLH71-like
STRINGXP_009631535.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-77beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]