PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 349aa MW: 39976 Da PI: 7.0876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 170 | 215 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ ++f +L +lP + kK++Ka+iLe+A++++k+L XP_009630109.1 170 DHIIAERKRREKLSQRFVTLSAILPGL-----KKVDKASILEQAIRHVKEL 215 6999***********************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.926 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 170 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 170 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-16 | 170 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-11 | 171 | 220 | No hit | No description |
SMART | SM00353 | 6.6E-13 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDNSSLRWFS RMGEAGAYYS NEKKSFDDFT TQKSTISEDQ ETRELSLSPD SHAYSRSNYF 60 NQEIKSKVSK IDFSLITPLE NCPIGSKRPA ANQLKMNTNM LSFTKNNNMD SVPNHQSCKI 120 EAVDEIYLCD SDHKYFQFLK SKSGYDLNDS QATKLGQGQK RERLPSVDQD HIIAERKRRE 180 KLSQRFVTLS AILPGLKKVD KASILEQAIR HVKELKEKVQ QLEEEEKTRS QESVMFVNKS 240 QLEEDDHSSS SSDENNHCSS GDADIEVRFS DHKNVLIRIT CERRNAFVLN IHNEIEKLHL 300 SIVQSCMMPF GKKAIDVTVV AQTEDSFCMS LKDLVKHVRM VTARLMTQA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 179 | ERKRRE |
2 | 175 | 180 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630109.1 | 0.0 | PREDICTED: transcription factor bHLH18-like isoform X1 | ||||
Swissprot | Q9T072 | 9e-47 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S4DHT3 | 0.0 | A0A1S4DHT3_TOBAC; transcription factor bHLH18-like | ||||
STRING | XP_009630109.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13602 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-36 | bHLH family protein |