PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629262.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 447aa MW: 49489.9 Da PI: 6.4381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.5e-05	339	376	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L XP_009629262.1 339 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 376 5566777888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	327	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-4	337	380	No hit	No description
SuperFamily	SSF47459	9.29E-11	337	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	341	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 ESVVLQELPK HDSTLQMLGI GLSSSSTSST PDWNHTMMHG NERADSSYPS ILQEDLNSSL 120 NYRQETGVDC SHELGKNFST ITEDSSRNSF KHQDFTLGMN PITSSTNTDQ STVISSSFPM 180 NSSFSNYPSA LLQTLFDNDP PPPPQQQPQQ QSLFTNNNQP MNFPATLNYR PNLNDHFSPS 240 LPKFPPLLRP SLPKQTPSNF PFTNPTSLNN MRGNLLPSMH SQLLPLPTFH EKSSAPNVSA 300 KSNVEEFRES RAKKSGNSEP AFKRPRMETP SPLPTFKVRK EKLGDRITAI QQLVSPFGKT 360 DTASVLHEAI EYIKFLHDQV NVLSTPYLKT GSPPLHQQTA DKVKEQEGSK QDLRSRGLCL 420 VPISSTFPVA TETTTDFWTP NFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD  60
ESVVLQELPK HDSTLQMLGI GLSSSSTSST PDWNHTMMHG NERADSSYPS ILQEDLNSSL  120
NYRQETGVDC SHELGKNFST ITEDSSRNSF KHQDFTLGMN PITSSTNTDQ STVISSSFPM  180
NSSFSNYPSA LLQTLFDNDP PPPPQQQPQQ QSLFTNNNQP MNFPATLNYR PNLNDHFSPS  240
LPKFPPLLRP SLPKQTPSNF PFTNPTSLNN MRGNLLPSMH SQLLPLPTFH EKSSAPNVSA  300
KSNVEEFRES RAKKSGNSEP AFKRPRMETP SPLPTFKVRK EKLGDRITAI QQLVSPFGKT  360
DTASVLHEAI EYIKFLHDQV NVLSTPYLKT GSPPLHQQTA DKVKEQEGSK QDLRSRGLCL  420
VPISSTFPVA TETTTDFWTP NFGGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629262.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S4BJ65	0.0	A0A1S4BJ65_TOBAC; transcription factor bHLH112-like
STRING	XP_009629262.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-55	bHLH family protein