PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627647.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 308aa    MW: 34513.8 Da    PI: 7.7486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1393136855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  XP_009627647.1  93 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136
                     6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.83E-1684147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.92285135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1589147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-1390140No hitNo description
SMARTSM003532.4E-993141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1093136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.7E-5225289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNEKNYRDCL LWENQGCSNL NSNNLDGSEE KFAGDKLSDP NRSNTSYDQQ RTTAKETKAA  60
ARGRKRTASG RKESDEAKCG GEGESDHEIH IWTERERRKK MRNMFSNLHA LLPQLPPKAD  120
KSTIVDEAVN YIKTLQNTLQ KLQKQKLEKL HCLTATMNSN DFSIITSQKL LESNNRELFL  180
ADQGSTSNST AITPTNNNNN TTPLLNIPAV FQTWTSPNVI LNVCGEEAHI SICCLKKPGI  240
LSGICFVLEK YKIEMVSTQV SSDHYRSLYM IQAHATGGST LNQFSEALTV EEIYKQAAGE  300
IMLWATSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375861e-36AC237586.1 Populus trichocarpa clone POP031-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627647.10.0PREDICTED: transcription factor bHLH95-like
RefseqXP_016439647.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1S3XIZ40.0A0A1S3XIZ4_TOBAC; transcription factor bHLH95-like
STRINGXP_009627647.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-24bHLH family protein