PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 663aa MW: 75200.2 Da PI: 5.7268 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.5e-23 | 125 | 225 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+kvlt sd+ ++ l++p k a ++ + +k+ + +l+++d+sg++W++k+ + ++++r++lt+GW+ Fv++++L +gD vvF + r + XP_009625168.1 125 FCKVLTASDTKSNWGLSIPQKDAVKCfppldmSRDKPIQ-ELVVKDLSGKEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVSGDLVVFLR--ReE 216 99****************************995555564.9************************************************4..448 PP EE..EEEEE CS B3 89 efelvvkvf 97 ++ +v+++ XP_009625168.1 217 NGDVHVGFR 225 888888876 PP | |||||||
2 | Auxin_resp | 29.7 | 2.8e-11 | 251 | 302 | 1 | 54 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 a++a++++ +F+v+ +P++ s+F+++++k+++a++ + v m fkm e +s XP_009625168.1 251 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINLGLGVSMTFKMPSEIANS 302 567899***********95..9*************************9997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-27 | 116 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-34 | 118 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.98E-21 | 123 | 225 | No hit | No description |
SMART | SM01019 | 1.9E-16 | 125 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 125 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-20 | 125 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-9 | 251 | 302 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MWSSHPKKQN HIASKGDDDL YRELWKAFAG QSMDVPRVGE QVYYFPGLHI KQLEQSLIQE 60 LNQGTPILDP YLKILCHAVH VRFLVENISE EIYAEINLLP KQDQTEPVNP DFYHSKIPRP 120 QIHSFCKVLT ASDTKSNWGL SIPQKDAVKC FPPLDMSRDK PIQELVVKDL SGKEWRFKHV 180 FGGHPRRHLL TNGWSAFVNS KKLVSGDLVV FLRREENGDV HVGFRHLLCQ KSSVEAPIAS 240 SLDIKGVLAV ASDALASQRP FSVYCKPQTS QFIISLNKYL EAINLGLGVS MTFKMPSEIA 300 NSHGSFTCMA NEKDQMQINQ YSQNANVFLN EDEEHMEDAE AIVYSPPRHS TTPSEIGEKR 360 HSDHTIYISP VEGNVESTYE GGTRKHNEVS NPVEIESIRG TEEHKEITTS SWNFNPIQEQ 420 ELEDAEIIKD ILPIVSQNLP LDYTVPSNTD NDQFLPIMQD SEEWQNFQGT DFPLHVQPPS 480 GNSSKSMHPT SISSHIPCDG PSHADEKVHW EGYHVARHYI PILSRIISQY PSTLSSFKAT 540 SPIFQSMCLE ILAELVYLLG QFTTANMDIK YLSEAKRYLR DLKLSGIEIG WLEKRLAKVE 600 DIFTMKRISI RRQELVLGIE DTTATLRLMN EELGSLDMEL QKLSSNINLK TPAEERPILD 660 GLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-81 | 18 | 295 | 17 | 296 | Auxin response factor 1 |
4ldw_A | 3e-81 | 18 | 295 | 17 | 296 | Auxin response factor 1 |
4ldw_B | 3e-81 | 18 | 295 | 17 | 296 | Auxin response factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625168.1 | 0.0 | PREDICTED: uncharacterized protein LOC104116082 isoform X1 | ||||
TrEMBL | A0A1S3Z5T1 | 0.0 | A0A1S3Z5T1_TOBAC; Auxin response factor | ||||
STRING | XP_009625168.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15344 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 1e-83 | auxin response factor 11 |