PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622637.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 255aa    MW: 27338.6 Da    PI: 9.9476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-202979256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aaka++aa+++++g+
  XP_009622637.1 29 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAAKAYDAAAREFRGA 79
                    6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.6E-392992IPR001471AP2/ERF domain
CDDcd000187.69E-202986No hitNo description
PfamPF008471.8E-132978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-322986IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-222986IPR016177DNA-binding domain
PROSITE profilePS5103223.922986IPR001471AP2/ERF domain
PRINTSPR003675.3E-113041IPR001471AP2/ERF domain
PRINTSPR003675.3E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPKQQGGAI AVPVTAAVGK VNGISKEVHY RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAEDAAKAYD AAAREFRGAK AKTNFPPPEE ENLKIAQNNL GVKINKNIND NNNRSPSQSS  120
TVESSSRDGL SPAVMVDSSP LDLSLGVKFP FQNHQLRTSP ISGGFPGCGF TGATPAVNHH  180
MYYLEALARA GVINLEKHQQ RKTVDFLGGS SGGSGSGTQS ESDSSSVIDF MRTDVKPTTR  240
TGLNLDLNFP PPENV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-222986260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690790.0AB669079.1 Nicotiana tabacum NtERF#111 mRNA for ethylene response factor #111, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311895.10.0ethylene-responsive transcription factor 4-like
RefseqXP_009622637.10.0PREDICTED: ethylene-responsive transcription factor 4
TrEMBLR4WAH70.0R4WAH7_TOBAC; Ethylene response factor #111
STRINGXP_009622637.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-28erf domain protein 9