PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622611.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 269aa    MW: 29526 Da    PI: 9.4079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS68.21.6e-21176268140233
            GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklv 231
                      +lR+Tg g+ +++++++l+++g++La++Ae++gv+fef+ +va++l+dl+ e L++++    E+++Vn+v++lhrll++++++e+    vL+ v
  XP_009622611.1 176 MTLRLTGSGPTQPDNTDALQQVGWKLAQLAETIGVKFEFQGFVANSLADLDDEILDLRSsieTEVVVVNSVFELHRLLARPGAVEK----VLNSV 266
                     489******************************************************99999**********************99....99999 PP

            GRAS 232 ks 233
                     k+
  XP_009622611.1 267 KQ 268
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.5131269IPR005202Transcription factor GRAS
PfamPF035145.5E-19176268IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTRPRVVDRI REEEWSVGLR NREGCATKAE KVLAGGKIFS THSQSRSRKC EEGMESGLIV  60
HREHGGRVAF VKKSSPGNLG AELLWTTKAS IKDVSTFQIQ AITCSCSGSG ASHLRRMIAG  120
VKAQIQLLGD YVVAAMSSLL SLLQFRFIEF TVIMELLACL ARSVRRHRNS GGSWVMTLRL  180
TGSGPTQPDN TDALQQVGWK LAQLAETIGV KFEFQGFVAN SLADLDDEIL DLRSSIETEV  240
VVVNSVFELH RLLARPGAVE KVLNSVKQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0821482e-99KR082148.1 Nicotiana benthamiana GAI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622611.10.0PREDICTED: DELLA protein RGA2-like
STRINGXP_009622611.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-34GRAS family protein